Current spacecraft outside Earth orbit have little or no protection.
- they have no sensors that can detect small objects, and we can't detect small objects (say, less than 100 m in diameter) from Earth either
- they don't carry enough fuel to make course corrections quickly enough to avoid an object
- their structure is not built to withstand impacts from anything larger than a speck of dust at 10 km/s.
There are a few exceptions. Comet missions like Giotto and Stardust have a Whipple shield, because the environment around a comet is dense enough to guarantee hits.
For risky operations (flying through an area where debris is known to exist) spacecraft are sometimes commanded to fly in the 'antenna to ram' direction. This means the dish antenna faces forward, and the dish can act as a Whipple shield. Cassini used this on occasion, for example.
This was one of the contingency plans for New Horizons' encounter with Pluto (there was a suspicion Pluto might have rings).
See also this question on the preparations for New Horizons' flyby of Pluto. There were concerns that there might be a lot of debris in Pluto's orbit.
How risky it it to travel through space and does higher speeds equal more risk?
Generally, space is empty. Very empty. Empty enough that we can travel to Pluto without hitting anything. There are a few exceptions:
- man-made debris in Earth orbit
- planets with moons can have lots of debris (meteoroid impact on the moon, debris of the impact reaches escape velocity and orbits for a while). The ultimate case of this is a ring system.
And higher speeds equal more risk.
The amount of kinetic energy Ek in a collision depends on the square of the speed:
$ E_\text{k} =\tfrac{1}{2} mv^2 $
This means that at the usual speeds reached by interplanetary probes (10-100 km/s) a grain of sand will go right through a plate of aluminium. You can protect against small debris (up to a few mm in diameter) using a Whipple shield, but you can forget about protecting against larger debris.
A wedge shape provides more protection. This principle is used in armored vehicles. The problem is that the energies involved are so high, you'd need a very shallow angle, which creates a very long, heavy cone. Interplanetary probes don't have the weight budget to accommodate that.